Search for miracle in a Matrix Universe

Let’s play with the popular Matrix scenario supposing that we live in a coded, artificial universe. In this case one of the most important questions is: Why we cannot able to observe any sound evidence of this fact?
Unless our mighty coder is either pathetically incompetent or he/she doesn’t want to unmask him- or herself, it is logical to expect some signs that points out that it is a constructed world.
These signs should be clear and apparent. In other words, they should be easily distinguishable from every other component of our world: A “miracle” seems to be appropriate for this purpose. Obviously, it should be really convincing: According to Hume, “no testimony is sufficient to establish a miracle, unless the testimony be of such a kind, that its falsehood would be more miraculous, than the fact, which it endeavors to establish”.
It was impossible to detect a “miracle” in the pre-scientific eras of human history, since it was possible to interpret any phenomenon as a miracle (and to attribute e. g. to a god) and science didn’t exist serving as a reference point. When everything is miracle, then a miracle has no distinctive function at all.
So it is logical from the coder’s point of view to hide such a kind of a “miracle” that can be detectable as a deep irregularity only after the beginning the era of the science. Optimally, it would be a very strange phenomenon remaining unexplained from the early experiments to date.
But according to the history of science, it is difficult (or even impossible) to find such a phenomenon. Neither planetary motions nor lightings are unanswered questions today, and although we have to face with some unsolved problems (e. g. the origin of life), we have better and better attempts to decode them. In accordance with this, every scientific era has different central problems from the theory of electromagnetism to the non-existence of ether. So: where is that mysterious miracle?
Perhaps logically impossible to construct a world both with intelligent beings and such a kind of unanswerable problems: We humans simply work out reasonable solutions for any irregularities (even they aren’t necessarily true).
Another possibility is that from our coder creator’s point of view, there is not a substantial difference between the science of the early 17th and the 21th century. He/she wasn’t able (or willing) to specify exactly the level of scientific knowledge needed to discover his/her signs. It would be a good piece of news for us, since it suggests that the future development of science will be enormous, and in comparison to the reachable level in future, there is no an essential difference between Galileo’s scientific knowledge and the string theory.
So it is possible that we still didn’t find that message-anomaly.
Or: we already found it, but we still didn’t recognize it as a quintessential “miracle”. My favorite candidate is the dark energy and I am really curious whether it will be an unsolved problem a million years from now.

How (not) to avoid the G-world in cosmology?

The first chapter’s title in Mary – Jane Rubinstein’s recently published book entitled Worlds Without End. The Many Lives of the Multiverse is: How to Avoid the G-word.
Namely, the God.
It is an interesting trend that not trying to avoid the G-word is an acceptable attitude for some modern cosmologist, although the Creator’s existence or non-existence hasn't play a role in modern optics or mechanics (what is more, it is not a question in the explanation
At the beginning of the 17th century Galileo argued that there were two books written by God. One of them was the the Bible and another was the book of nature. Although it was a common belief of that age that both of them used the same language, according to Galileo, the second one used the language of mathematics. [John Hedley Brooke: Science and Religion, p. 104] Supposing the existence of a Creator who created the World for humans, it is an open question why He had decided to use two different languages, and why an exotic and complicated system was introduced to describe the physical reality created by Him. In other words: why the physical reality is so complicated that it is impossible to describe it in everyday words? Was it a necessity to hide the structure of the world behind a complicated and non-evident formulism?
Obviously, Galileo’s concept based on a kind of Neoplatonic mathematical mysticism. According to it, the fundamental structure of our Universe is not only can be described by mathematics, but the nature itself is purely mathematical. But it is not an answer for the question why decided God to choose this language.
On the other hand, a group of physicists in the 17th century refused the Aristotelian concept which stated that an explanation cannot be complete without pointing out a final cause. Since Aristotle didn’t favor mathematics as a language of world description, Galileo’s approach offered a way to deny any argumentation based on final cause, and Descartes decided to focus on immediate causes of physical events. [Brooke, ibid, p. 72]
Since then it became a tradition in natural sciences to study those immediate causes and omitting either a final cause or the intervention of a Creator. But – to oversimplify the problem – when somebody studies either the “fine-tuned” nature of our Universe or the supposed existence of multiverses, there isn't an opportunity to study his or her subject from Descartes’ approach, because there is no an existing physical event to examine.
According to Bernard Carr, “If you don’t want God, you would better have a multiverse.” Namely: if you don’t want to refer to God, then you can replace Him with the idea of Multiverse – or vice versa. The “Multiverse replaces God with what is perhaps an equally baffling article of faith: the actual existence of an infinite number of worlds.” [Rubinstein, p. 29]
We have two different strategies to handle the causes. One can choose Descartes’ approach to always focus on immediate ones – and then he or she can ask another question about the solved problem’s immediate cause. We can move forward step by step – its mathematical analogy is the potential infinity where every piece of the result is finite and it can be achieved in a finite number of steps, but this process never has an endpoint.
The other approach is more problematic. If we are allowed to ask for a not immediate cause, then we could ask what caused that cause, etc. [Rubinstein, p. 21] and the result is an infinite regress without end.